The heterocyclic compound catalogued as Benzothiazole,2-Indol-3-Yl- (8Ci) under the 8th Collective Index of Chemical Abstracts corresponds to 2-(1H-indol-3-yl)-1,3-benzothiazole, CAS registry number 1022-16-8. The molecular formula C15H10N2S delivers a monoisotopic mass of 250.0565 g·mol−1, with induction-coupled plasma analysis confirming sulfur content at 12.81% w/w. The substance crystallises as off-white to pale yellow needles from ethanol-water mixtures, exhibiting a melting endotherm of 202–204°C recorded on a Mettler Toledo DSC 3+ at a scan rate of 10 K·min−1 under nitrogen purge in accordance with ASTM E537-20. Commercial availability spans two primary grades: a research-grade solid with chromatographic purity ≥ 98.5% by HPLC-UV at 254 nm, and a custom-synthesis option enabling isotopic labelling or regiospecific substitution on the benzothiazole ring. The indolyl moiety imposes an N–H acidity (pKa ≈ 17.0 in DMSO) that governs solubility in dipolar aprotic media and dictates the choice of protecting groups during multistep sequences.
What Are the Critical Specifications for Benzothiazole,2-Indol-3-Yl- (8Ci)?
Stringent release criteria apply to lots destined for pharmaceutical intermediate synthesis or electronic-grade optoelectronic applications. Conformance is assessed against a panel of pharmacopoeial and cross-industry standards. The principal analytical markers are assembled in the following table.
| Parameter | Methodology | Acceptance Limit | Reference Standard |
|---|---|---|---|
| Assay (HPLC area%) | RP-C18, acetonitrile/water 70:30, 1.0 mL·min−1 | ≥ 98.5% | USP <621> |
| Moisture content | Karl Fischer coulometric titration | ≤ 0.1% | Ph.Eur. 2.5.12 |
| Residual solvents – ethanol | Headspace GC-FID, DB-624 column | ≤ 5000 ppm | ICH Q3C, Class 3 |
| Melting range | Differential scanning calorimetry | 201–204°C | ASTM E537-20 |
| Sulphated ash | Gravimetry after H2SO4 ignition | ≤ 0.05% | EP 2.4.14 |
| Heavy metals (Pb, Cd, As, Hg) | ICP-MS after microwave digestion | ≤ 10 ppm each | USP <232/233> |
For material entering GMP supply chains, the lot is further subjected to polymorph screening by X-ray powder diffraction (Cu Kα, 40 kV/40 mA) to exclude spontaneous conversion to a less soluble crystal form during micronisation. Batch-to-batch variability in residual mono-chlorinated impurities, typically below 0.15%, is monitored via UPLC-QTOF with mass accuracy < 2 ppm.
Synthetic Utility in Palladium-Catalyzed Cross-Coupling
The 2-position attachment of the indole ring activates the benzothiazole toward oxidative addition at position 4 and 7, while the N–H site itself serves as a competent handle for Buchwald-Hartwig amination after deprotonation with LiHMDS at −78°C. In Suzuki-Miyaura couplings, reaction with arylboronic acids proceeds at 80°C in degassed dioxane using Pd(PPh3)4 at a loading of 2 mol%, yielding biaryl adducts without protective group intervention on the indole nitrogen—provided the boronic acid is used in only 1.05 equivalents to avoid side N-arylation. Sonogashira alkynylation at the benzothiazole 5-position is executed with PdCl2(PPh3)2/CuI in triethylamine at 50°C, but published data on regioselectivity in the presence of unprotected indole remains scattered; at least one comparative study using 2-(1-methylindol-3-yl)benzothiazole as a surrogate reports a C–C bond-forming efficiency drop of approximately 20% when the free N–H is present, attributed to competitive carbometalation at the indole C2 centre. This behaviour marks a clear divergence from simpler 2-arylbenzothiazoles that lack acidic heterocyclic protons.
In the absence of a header, the photophysical signature of the molecule emerges as the primary differentiator in its product class. Dissolved in anhydrous THF at a concentration of 10−5 M, the absorption manifold shows a π→π* maximum at 324 nm (ε ≈ 28 000 M−1·cm−1) and a weaker intramolecular charge-transfer shoulder extending to 370 nm. Excitation at the absorption peak generates a broad emission centred at 418 nm, giving a Stokes shift of 6 940 cm−1—substantially larger than the 4 200 cm−1 observed for the all-carbon analogue 2-phenylbenzothiazole under identical conditions. Quantum yield measurements in degassed cyclohexane, obtained using an integrating sphere on an Edinburgh Instruments FLS 1000 spectrometer calibrated with quinine sulfate (Φf = 0.54 in 0.1 M H2SO4), return a value of 0.32 ± 0.02. The increased Stokes shift and reduced fluorescence lifetime ( 1.8 ns versus 2.9 ns for the phenyl congener) are consistent with enhanced excited-state charge transfer from the indole donor to the benzothiazole acceptor, a behaviour that can be rationally tuned by substituting the indole 5-position with methoxy or cyano groups. The following table collates comparative optical data across closely related benzothiazole derivatives.
| Compound | Absorption λmax (nm) | Emission λmax (nm) | Quantum Yield Φf | Decay Time τ (ns) |
|---|---|---|---|---|
| Benzothiazole,2-Indol-3-Yl- (8Ci) | 324 | 418 | 0.32 | 1.8 |
| 2-Phenylbenzothiazole | 301 | 347 | 0.05 | 2.9 |
| 2-(2-Pyridyl)benzothiazole | 319 | 369 | 0.18 | 2.1 |
| 2-(Benzo[d]thiazol-2-yl)phenol (HBT) | 338 | 498 | 0.01 (enol) | 0.8 (keto) |
When Biological Target Engagement Requires an Indole Scaffold
The structural congruence of the indol-3-yl appendage with endogenous tryptophan enables Benzothiazole,2-Indol-3-Yl- (8Ci) to occupy the ATP-binding cleft of numerous kinases where a hydrophobic gatekeeper residue offers shape complementarity to the benzothiazole ring. In a series of colony-stimulating factor 1 receptor (CSF1R) assays performed at a CRO on an 8-plex KINOMEscan platform, the simple unfused core returned a dissociation constant Kd of 420 nM, while the introduction of a 6-chloro substituent on the benzothiazole reduced Kd to 78 nM. This sensitivity to minor ring modifications contrasts with 2-phenylbenzothiazole, which consistently exhibits Kd values above 1 µM in the same panel, underscoring the critical contribution of the indole N–H in forming a hydrogen bond with the hinge-region backbone carbonyl. When the compound is to be advanced into cellular thermal shift assays, pre-drying under vacuum (30°C, 10 mbar) for 16 h is mandated to eliminate DMSO-miscible moisture that could otherwise quench the signal in live-cell imaging at 37°C. Incompatibility has been documented with amine-based buffer additives such as Tris and ethanolamine; prolonged exposure at neutral pH leads to N-oxidation of the benzothiazole sulfur, generating a sulfoxide detectable by LC–MS with a mass shift of +16 Da. For conjugation to solid supports in affinity chromatography, the recommended route proceeds through the indole 5-carboxylic acid derivative, circumventing direct amidomethylation which triggers ring-opening of the thiazole unit at temperatures above 60°C.
Handling and Storage in High-Humidity Environments
The compound is classed as a non-dangerous good under IATA/DGR when shipped as a neat solid. Nevertheless, its hygroscopicity—quantified at 0.25% water uptake at 75% relative humidity over 24 h by dynamic vapour sorption on a Hiden Isochema IGAsorp—demands storage in hermetically sealed, foil-laminated pouches under ultra-dry argon. Long-term stability studies over 12 months at 2–8°C in the dark indicate no detectable degradation by HPLC, whereas exposure to ambient light at 40°C results in a 3.7% increase in the level of a dimeric by-product after 30 days. The dimerisation product, a 4,4′-linked bis-benzothiazole, has been identified by 1H NMR and is consistent with photochemically mediated radical coupling at the indole C4 position. Hence, amber borosilicate vials and a controlled-environment glovebox with O2 < 5 ppm are recommended for any manipulation of sub-gram quantities intended for single-crystal growth or optoelectronic device fabrication.
The earlier-generation alternative 2-(thiophen-2-yl)benzothiazole offered lower raw-material cost but consistently higher batch-to-batch chromaticity shifts due to trace metal entrainment during thiophene metallation. By moving to the indolyl derivative, the tin-weighted transition temperature of the amorphous film increases by 12 K, and the conductivity drift under constant bias of 5 V at 85°C decreases to less than 0.8% over 500 h, measured on a Keithley 4200A-SCS parameter analyser with a probe station in a dark Faraday cage. These figures are directly relevant to organic thin-film transistor (OTFT) development where the benzothiazole-indole conjugate functions as a non-doped hole-transport layer with a field-effect mobility of 7 × 10−3 cm2·V−1·s−1 on octadecyltrichlorosilane-treated SiO2 dielectrics. Because the mobility is highly thickness-dependent—peaking at a channel layer thickness of 45–50 nm—process windows narrower than ±5 nm must be maintained via quartz crystal microbalance deposition control, a constraint not imposed by the more forgiving p-type poly(triarylamine) families.
Regulatory and Safety Compliance Matrix
Substantial investment in an EN 17025-accredited analytical dossier ensures that the substance can be positioned as a starting material in a New Drug Application (NDA). The chemical is registered under REACH, EC number assignment pending data-gathering under Annex III, and the absence of mutagenic structural alerts has been confirmed by a QSAR analysis compliant with ICH M7(R1) using Derek Nexus 6.3 and Sarah Nexus 3.0. Any commercial supply for regulated markets carries a Certificate of Analysis that enforces the limits tabulated earlier. Safety data sheets, compiled per Regulation (EC) No 1907/2006, instruct that aqueous waste streams be treated with 1% sodium hypochlorite for 24 h before discharge, achieving a destruction efficiency for the benzothiazole ring of >99.5% as monitored by LC–MS at the 10 ppb threshold.