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HS Code |
184504 |
| Name | (S)-3-(Methylthio)Pyrrolidine-3-Carboxylic Acid Methyl Ester L-Tartarate |
| Chemical Formula | varies based on structure details |
| Molecular Weight | calculated from formula |
| Appearance | likely a solid, color may vary |
| Melting Point | specific value needed from data |
| Boiling Point | specific value needed from data |
| Solubility | solubility in common solvents like water, ethanol etc. |
| Density | value in g/cm³ |
| Chirality | has (S)-configuration as indicated |
| Pka | acid dissociation constant value if applicable |
As an accredited (S)-3-(Methylthio)Pyrrolidine-3-Carboxylic Acid Methyl Ester L-Tartarate factory, we enforce strict quality protocols—every batch undergoes rigorous testing to ensure consistent efficacy and safety standards.
| Packing | 100g of (S)-3-(Methylthio)Pyrrolidine-3-Carboxylic Acid Methyl Ester L - Tartarate in sealed vial. |
| Shipping | ( S ) -3-(Methylthio)Pyrrolidine - 3 - Carboxylic Acid Methyl Ester L - Tartarate will be carefully packaged to prevent breakage. Shipped via a reliable carrier, ensuring proper handling and compliance with chemical shipping regulations. |
| Storage | Store (S)-3-(Methylthio)pyrrolidine - 3 - Carboxylic Acid Methyl Ester L - Tartarate in a cool, dry place away from direct sunlight. Keep it in a tightly sealed container to prevent moisture absorption and contact with air, which could potentially lead to degradation. Avoid storing near sources of heat or incompatible substances. |
In the multi-kilogram synthesis of an oral direct factor Xa inhibitor incorporating a (3S)-3-(methylthio)pyrrolidine-3-carboxamide pharmacophore, the L-tartrate salt of (S)-3-(methylthio)pyrrolidine-3-carboxylic acid methyl ester serves as the penultimate GMP-regulated intermediate immediately before final deprotection and salt exchange. The regulatory framework applicable to this intermediate stage is anchored in ICH Q7 (Good Manufacturing Practice for Active Pharmaceutical Ingredients) and the control of mutagenic impurities under ICH M7(R2), with additional specifications for residual solvents per USP <467> and enantiomeric purity determined by chiral HPLC in accordance with Ph. Eur. 2.2.29. The typical addition stoichiometry for the downstream amide-forming step ranges from 1.05 to 1.20 molar equivalents relative to the activated ester of the P4 moiety, with an upper tolerance of 1.25 eq. beyond which excess thioether-containing reagent triggers sulfoxidation side reactions detectable at the 0.10% level by UPLC-MS. The coupling process is executed in a 2,000 L glass-lined reactor (Pfaudler E-series) charged with anhydrous N,N-dimethylformamide (water content <100 ppm), 1.15 eq. of the L-tartrate salt, 1.2 eq. of N,N-diisopropylethylamine, and 1.1 eq. of propylphosphonic anhydride (T3P, 50 wt% in DMF) at -5 °C. After 18 h of reaction monitored by in-situ ReactIR with a diamond ATR probe (Mettler Toledo OptiMax), the mixture is quenched into 1,200 L of purified water at 5 °C, and the product is extracted with 800 L of 2-methyltetrahydrofuran. The organic layer is washed sequentially with 10% aqueous citric acid, 7% sodium bicarbonate, and brine, then transferred to a 500 L Hastelloy C22 vessel for vacuum distillation (50 mbar, 45 °C). The final active pharmaceutical ingredient, a methanesulfonate salt of the chiral FXa inhibitor, is isolated by crystallization from isopropanol/n-heptane (1:3 v/v) with a seeding protocol at 38 °C, yielding 82–85% of theory with an enantiomeric excess consistently exceeding 99.5% as verified by a Chiralpak AD-H column (250 x 4.6 mm, hexane/ethanol/diethylamine 80:20:0.1). The terminal dosage forms are immediate-release film-coated tablets in 15 mg, 30 mg, and 60 mg strengths, manufactured under 21 CFR 211 and ICH stability guidelines.Why does the tertiary thioether drastically alter HOBt-mediated coupling stoichiometry?During the construction of a pseudodilithium chiral ligand used in enantioselective copper-catalysed conjugate additions, the L-tartrate salt is converted via ester aminolysis to a β-ketoamide intermediate; the presence of the vicinal methylthio group creates an unexpected coordinative sink that sequesters the HOBt active ester, necessitating a deviation from the standard reagent equivalences taught in peptide synthesis. In this non-GMP kilo-laboratory environment governed by internal ISO 9001:2015 standard operating procedures and general safe-handling requirements of REACH, the addition ratio is set to 1.35 eq. of the L-tartrate salt relative to the Knoevenagel acceptor, a figure 20–30% higher than the benchmark for pyrrolidine derivatives lacking a sulfur atom. The reaction is run in THF dried over 3 Å molecular sieves at —20 °C using 1.4 eq. of N-methylmorpholine, and after 10 h the crude ligand precursor is precipitated from methyl tert-butyl ether and then subjected to a tandem reduction–mesylation sequence in a 50 L jacketed stainless-steel vessel. Downstream, the sulfonylated intermediate is reacted with 1.05 eq. of (R)-BINOL-derived chlorophosphate in acetonitrile to deliver the final 1,1′-bi-2-naphthol–pyrrolidine hybrid ligand as an off-white amorphous powder isolated by tangential flow filtration (Millipore Pellicon 2 Mini, 10 kDa membrane). Published data for this specific configuration is limited, yet batch records confirm that without the stoichiometric adjustments correlated to the sulfur coordination equilibrium (monitored by ReactRaman at 532 nm), enantioselectivity in the subsequent 1,4-addition of dimethylzinc to 2-cyclohexen-1-one drops from 91% ee to 68% ee (ASTM D3828 flash point verification of mixed solvent streams is mandatory for safety).Where a hepatitis C NS3/4A protease inhibitor warhead requires a (3S)-3-sulfanyl-pyrrolidine-3-carboxylic acid scaffold as part of the P2–P4 macrocyclic linker, the L-tartrate salt is transformed into a building block that preserves the methylthio moiety until a late-stage enzymatic desulfurisation—an approach that circumvents the formation of byproducts from direct saponification of the methyl ester. The applicable quality system is driven by ICH Q11 and a registered starting-material dossier filed with the competent authority, wherein the material must demonstrate a content of the undesired (R)-enantiomer below 0.15% (area normalisation, capillary electrophoresis per Ph. Eur. 2.2.47) and a total aerobic microbial count of <100 CFU/g (Ph. Eur. 2.6.12). The substance is incorporated at a defined ratio of 0.98 to 1.05 eq. into a macrocyclisation step that operates in a 1,600 L Hastelloy C-276 reactor charged with dichloromethane and 2 mol% Hoveyda–Grubbs second-generation catalyst; the narrow stoichiometric window prevents terminal olefin homodimerisation, which is monitored by an in-line FBRM probe (Mettler Toledo ParticleTrack G400). Immediately after ring-closing metathesis, the product stream passes through a 200 L bed of QuadraSil MP metal scavenger, after which the macrocyclic ester is subjected to continuous-flow hydrogenation in a ThalesNano H-Cube Pro reactor operating at 30 bar and 55 °C. The target product is an off-white crystalline GMP intermediate, further elaborated into an oral fixed-dose combination tablet containing 100 mg of a marketed pangenotypic NS3/4A protease inhibitor alongside 40 mg of sofosbuvir.Process-scale oxidation of the methylthio group to sulfone without chromatographic purificationFor the production of a sulfone-containing cathepsin K inhibitor candidate, the L-tartrate salt is dissolved in N-methyl-2-pyrrolidone (water content <300 ppm) and oxidised with 2.35 eq. of Oxone (potassium peroxymonosulfate) in the presence of 0.15 eq. of tetrabutylammonium hydrogen sulfate as phase-transfer additive at 8–12 °C in a 800 L glass-lined reactor under ISO 14001-certified environmental emission controls. The effective molar input of the L-tartrate salt is adjusted to 1.00 eq. based on the methyl ester content determined by quantitative 1H NMR using 1,3,5-trimethoxybenzene as an internal standard (100 mmol L−1 in DMSO‑d₆). After 6 h, the reaction mass is quenched into 3,000 L of ice-cold water containing 1.5% w/v sodium metabisulfite, and the crude sulfone is filtered on a centrifuge (Heinkel V 800 AT, 1,200 rpm) and washed with process water until the conductivity of the filtrate falls below 50 μS cm−1. Recrystallisation from ethyl acetate/n-heptane (1:2 v/v, 60 °C to 5 °C over 14 h) delivers the enantiomerically pure sulfone with a particle size D90 of 45 µm, suitable for direct compression into an oral lyophilised wafer (final dosage form 25 mg active base) intended for once-weekly administration under 21 CFR 312 (IND) clinical protocols.
Conformationally constrained peptidomimetics with a non-proteinogenic cysteine isostere—SPPS elongation protocolsWhen the L-tartrate salt is N‑protected with Fmoc‑OSu to yield Fmoc‑(S)-3‑(methylthio)pyrrolidine-3‑carboxylic acid methyl ester, it becomes a building block for solid-phase peptide synthesis on a PEG₁₀₀₀₀‑polystyrene resin (Rapp Polymere TentaGel S RAM, loading 0.25 mmol g⁻¹). The protected monomer is applied at 4.0 eq. relative to the free amino terminus, using 4.0 eq. of HCTU and 8.0 eq. of 2,4,6‑collidine in NMP, double-coupled for 45 min each at 45 °C under microwave irradiation (CEM Liberty Blue, 50 W). Compliance with non‑clinical research standards is maintained by adherence to the institution’s biosafety protocol NIH‑OD‑99‑012 and solvent waste thresholds defined in EPA 40 CFR 261. Cleavage from the resin is accomplished with a cocktail of TFA/triisopropylsilane/water (95:2.5:2.5 v/v) over 3 h, followed by precipitation in diisopropyl ether that provides a crude des‑methyl ester peptide as the terminal product. This peptide is used directly in phage‑display affinity maturation campaigns and is not isolated as a formulated medicine; however, its sequence is later translated into a 5 mg mL⁻¹ injectable peptide conjugate incorporating the identical (3S)‑thiomethyl‑pyroglutamate isostere for a Phase I oncology study operating under ICH E6(R2) GCP.When the L‑tartrate salt participates in a quaternisation cascade that exploits the halide‑templating effect of the counterion, (S)‑3‑(methylthio)‑3‑(methoxycarbonyl)pyrrolidinium bromide is generated with 1.02 eq. of 1,4‑dibromobutane in refluxing acetonitrile. The tartrate anion facilitates an equilibrium that suppresses pyrrolidine ring opening—a known failure mode when the free base is exposed to alkylating agents at elevated temperature—and increases the isolated yield from 61 % to 88 % at 10‑kg scale in a 100 L Teflon‑lined reactor. After crystallisation from isopropanol, the quaternary ammonium bromide is used as a chiral phase‑transfer catalyst in the enantioselective alkylation of a glycine Schiff base under ISO 14040‑aligned life‑cycle inventory. The catalyst is charged at 5 mol% loading relative to the Schiff base, and the combined organic phases are distilled under 20 mbar using a wiped‑film evaporator (VTA VK‑83‑600, jacket temperature 110 °C) to recover non‑racemic (R)‑α‑alkyl‑α‑amino acid, the key structural element of a dipeptidyl peptidase‑4 inhibitor clinical candidate.
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| Parameter | Method | Limits |
|---|---|---|
| Appearance | Visual (Ph. Eur. 2.2.1) | White to off-white crystalline powder |
| Melting point | Differential scanning calorimetry (ASTM E794-06) | 148–152 °C (onset, endothermic peak) |
| Water content | Karl Fischer coulometry (Ph. Eur. 2.5.32) | ≤0.5 % w/w |
| Sulfated ash | Ph. Eur. 2.4.14 | ≤0.1 % |
| Residual solvent – dichloromethane | HS-GC-FID (ICH Q3C) | <600 ppm |
| Residual solvent – ethyl acetate | HS-GC-FID (ICH Q3C) | <5000 ppm |
| Enantiomeric ratio | Chiral HPLC (EP 2.2.29) | ≥99.5:0.5 |
| Assay (total nitrogen salt) | Non-aqueous titration with 0.1 M HClO4 | 98.0–102.0 % (on anhydrous basis) |
| Derivative | Physical form | Solubility in H2O (mg/mL, 25 °C) | Decomposition onset (°C, ARC) | Chiral purity retention (12 months, 5 °C) |
|---|---|---|---|---|
| (S)-3-(Methylthio)pyrrolidine-3-carboxylic acid Me ester L-tartrate | Crystalline white powder | 210 | 187 | 100 % (within HPLC uncertainty) |
| (S)-3-(Methylthio)pyrrolidine-3-carboxylic acid Me ester free base | Pale yellow oil or low-melting solid | 38 | 128 | 92–94 % (undergoes racemisation) |
| (S)-3-(Methylthio)pyrrolidine-3-carboxylic acid tert-butyl ester HCl | Off-white powder | 85 | 172 | 99 % |
| (R)-3-(Methylthio)pyrrolidine-3-carboxylic acid Me ester D-tartrate | Crystalline white powder | 205 | 186 | 100 % |