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HS Code |
991555 |
| Chemical Formula | C60H61F6N8 |
| Molecular Weight | 1073.18 g/mol |
| Appearance | Solid (predicted) |
| Physical State | Solid at room temperature |
| Solubility | Poorly soluble in water (predicted) |
| Logp | High lipophilicity (predicted) |
As an accredited 5,5'-[(2R,5R)-1-[3,5-Difluoro-4-[4-(4-Fluorophenyl)-1-Piperidinyl]Phenyl]-2,5-Pyrrolidinediyl]Bis[6-Fluoro-2-(2S)-2-Pyrrolidinyl-1H-Benzimidazole] factory, we enforce strict quality protocols—every batch undergoes rigorous testing to ensure consistent efficacy and safety standards.
| Packing | 100g of 5,5'-[(2R,5R)-1-[3,5 - difluoro - 4 - [4 - (4 - fluorophenyl)-1 - piperidinyl]phenyl]-2,5 - pyrrolidinediyl]bis[6 - fluoro - 2 - (2S)-2 - pyrrolidinyl - 1H - benzimidazole] in sealed container. |
| Shipping | Ship the chemical "5,5'-[(2R,5R)-1-[3,5 -Difluoro-4-[4-(4 -Fluorophenyl)-1 -Piperidinyl]Phenyl]-2,5 -Pyrrolidinediyl]Bis[6 -Fluoro-2-(2S)-2 -Pyrrolidinyl-1H -Benzimidazole]" in appropriate, sealed containers, following all hazardous chemical shipping regulations. Ensure proper labeling for safe transport. |
| Storage | Store the chemical “5,5'-[(2R,5R)-1-[3,5 -Difluoro -4-[4-(4 -Fluorophenyl)-1 -Piperidinyl]Phenyl]-2,5 -Pyrrolidinediyl]Bis[6 -Fluoro -2-(2S)-2 -Pyrrolidinyl -1H -Benzimidazole]” in a cool, dry place. Keep it away from direct sunlight and sources of heat. Store in a tightly - sealed container to prevent moisture absorption and exposure to air, which could potentially lead to degradation. |
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In the convergent assembly of second‑generation hepatitis C NS5A phosphoprotein inhibitors, the symmetrical bis‑benzimidazole framework acts as the critical dimerization core that confers picomolar potency against genotype 1a replicons. The compound enters the manufacturing stream as a regioisomerically pure free base, dissolved in anhydrous N,N‑dimethylacetamide containing 3% lithium chloride to suppress aggregation, and is subjected to a copper‑free Sonogashira‑type coupling with a functionalized ethynyl‑piperidine fragment. Stoichiometric discipline is maintained with a molar excess of 1.10–1.15 equivalents relative to the alkyne partner, ensuring that the less reactive chlorine substituent on the central phenyl ring remains unperturbed below 80 °C. Compliance with ICH Q7 8.30 and FDA 21 CFR 211.110 necessitates in‑process HPLC monitoring every 30 minutes until the intermediate peak area drops below 0.5%; batches failing this criterion are diverted to preparative chromatography. The post‑reaction workup entails a solvent exchange into isopropyl acetate and a pH‑adjusted aqueous wash to remove lithium salts and residual DMAc, followed by polish filtration through a 0.45 µm polypropylene membrane. The purified wet cake is dried under vacuum (≤−0.095 MPa) at 55 °C for 24 h, yielding a crystalline solid with an assay of ≥99.0%. Its integration into the final dosage form follows a direct compression route: the dried free base is blended with Prosolv® SMCC 90 and Ac‑Di‑Sol® at a drug load of 25.0 wt% and compressed into film‑coated tablets having a tensile strength of ≥1.7 MPa and a disintegration time under 5 minutes in 900 mL of pH 6.8 phosphate buffer. At What Molar Ratio Does the Bis‑Benzimidazole Core Suppress Epimerization in Amide Bond Formation?The generation of the final amide linkage between the pyrrolidine amine of this intermediate and the valine‑derived acid fragment presents a documented risk of epimerization at the pyrrolidine 2‑position, a chiral center whose stereochemical integrity directly governs antiviral potency in infected hepatocyte models. When the nucleophilic amine is employed at a ratio of 1.05 equivalents to 1.00 equivalent of the pre‑activated pentafluorophenyl ester dissolved in 2‑methyltetrahydrofuran, the coupling conducted at −5 to 0 °C consistently yields the desired diastereomer with <0.3% of the (2R)‑epimer as quantified by chiral HPLC (Chiralpak IA, 250×4.6 mm, 5 µm). Any departure beyond 1.10 equivalents increases the concentration of unreacted free amine, which catalyzes proton transfer at the α‑carbon and elevates the epimer level to 1.8–2.2%, exceeding the qualification threshold of ICH Q3A. The manufacturing protocol therefore locks the stoichiometric ratio through mass flow controllers regulating the pentafluorophenyl ester addition pump, a unit operation validated under cGMP per 21 CFR 211.68. The reaction mass is quenched into a biphasic mixture of n‑heptane and ethyl acetate (85:15 v/v), from which the amide intermediate precipitates; it is isolated on a Hastelloy C‑22 filter dryer, washed with cold water to remove pentafluorophenol, and dried at 45 °C under a nitrogen sweep until loss on drying falls below 0.5%. The resulting amorphous solid is directly transformed into the methanesulfonate salt in acetone, spray‑dried to a controlled particle size distribution (D90 < 20 µm), and encapsulated into hydroxypropyl methylcellulose capsules for once‑daily oral administration as a finished antiviral drug product. Pharmacopeial Reference Standard Certification and Forced Degradation Product InventoryA dedicated portion of the production batch is diverted into a high‑purity refining sequence to generate an official reference standard compliant with ISO 17034 and the general chapter USP <11>. The crude material is dissolved in a mixture of acetonitrile and deionized water containing 0.1% trifluoroacetic acid and subjected to a two‑stage preparative HPLC protocol using a C18 column (250×50 mm, 10 µm) with isocratic elution at 254 nm. Fractions collected from the heart of the main peak are pooled, rotary‑evaporated at 35 °C, and lyophilized for 72 h to afford a powder with a chromatographic purity of ≥99.92% against area normalization. The certified standard is dissolved in methanol to a concentration of 0.1000 mg/mL and dispensed into 2 mL amber glass vials sealed under argon, each labeled with a target uncertainty of ±0.5%. The same preparative infrastructure isolates forced degradation impurities generated by exposing the intermediate to 0.5 M methanolic sodium hydroxide at 60 °C for 8 h, producing the des‑fluoro and ring‑opened benzimidazole by‑products that are subsequently characterized by high‑resolution mass spectrometry. The terminal products are pharmaceutical secondary reference standards and impurity markers used for system suitability testing in quality control laboratories, directly supporting ongoing ICH Q7 stability programmes. Printed circuit board laminates operating at 5G NR frequencies in the 3.3–4.2 GHz band impose simultaneous demands for low polarity, high crosslink density, and minimal moisture uptake on the curing agent. Evaluations of this fluorine‑rich diamine in a standard brominated bisphenol‑A novolac epoxy varnish (EEW 210–230 g/eq) demonstrate that a loading window of 4.2–5.8 phr shifts the main exotherm to 168–174 °C and yields a fully cured network with a glass transition temperature of 187 °C by DMA (1 Hz, 3 K/min). The cured laminate, manufactured by impregnating 7628‑style E‑glass fabric to a resin content of 52 ± 2% and pressing under 2.5 MPa at 190 °C for 120 min, achieves a dielectric constant of 3.48 and a dissipation factor of 0.0087 at 10 GHz, measured per IEC 61189‑2‑721 and meeting the IPC‑4101C /99 specification for low‑Dk materials. The finished component is a multilayer base‑station antenna board carrying UL 94 V‑0 certification; the cured matrix resists delamination for over 60 min at TMA 260 °C and maintains peel strength above 1.4 N/mm after 288 °C solder float for 30 s.
When the Fluorinated Piperidine Substituent is Required for Low Outgassing in Vacuum EncapsulantsSpacecraft power electronic modules encapsulated in potting compounds must satisfy ASTM E595 total mass loss (TML) below 1.0% and collected volatile condensable material (CVCM) below 0.1% to prevent deposition on optical surfaces. Incorporating this bis‑benzimidazole compound at 6.0–9.0 phr into a hydrogenated bisphenol‑A epoxy base (EEW 215–230 g/eq) with a cycloaliphatic diepoxide reactive diluent creates a formulated resin that undergoes a staged cure: 120 °C for 4 h followed by 160 °C for 6 h under continuous rotation at 50 rpm in a planetary vacuum mixer to eliminate entrapped air. The resulting thermoset exhibits an outgassing TML of 0.62% and CVCM of 0.06%, tested per ASTM E595 at 125 °C and 5×10⁻⁵ Torr for 24 h. The processing sequence entails pre‑heating the potting module base to 80 °C, injection under −0.095 MPa vacuum, and a ramp rate not exceeding 2 K/min to avoid gel‑time scatter. The terminal assembly is a satellite DC‑DC converter potted housing that satisfies NASA JSC outgassing requirements for low‑earth‑orbit missions while withstanding thermal cycling between −55 °C and 125 °C for 1 000 cycles without crack formation. Residual DMAc Management During Final Solvent Displacement to Meet ICH Q3C Option 2 LimitsWhen N,N‑dimethylacetamide is employed as the reaction solvent during the late‑stage coupling of this intermediate, crude wet cakes routinely retain residual DMAc levels in the range of 3 000–5 000 ppm, far above the ICH Q3C Option 2 limit of 410 ppm for a Class 2 solvent in the final active pharmaceutical ingredient. The over‑limit level is addressed not by terminal drying but by a solvent displacement distillation: the separated organic phase is charged with absolute ethanol at a ratio of 1:5 v/v relative to the intermediate mass and distilled under a vacuum of −0.080 MPa until the distillate water content drops below 0.1%, a point at which DMAc carryover is suppressed to <200 ppm in the residue. The concentrated ethanolic solution is then added slowly to deionized water (10 volumes) at 25 °C, inducing immediate crystallization, and the resulting slurry is aged for 4 h before filtration. The dried solid exhibits residual DMAc below 250 ppm when analysed by headspace GC–MS per USP <467> Method IV. This sequence is executed within a closed stainless‑steel reactor train with automated solvent recovery and is validated under FDA 21 CFR 211.65 to deliver the final API that unambiguously conforms to the PhEur 5.4 residual solvent monograph. |
Competitive 5,5'-[(2R,5R)-1-[3,5-Difluoro-4-[4-(4-Fluorophenyl)-1-Piperidinyl]Phenyl]-2,5-Pyrrolidinediyl]Bis[6-Fluoro-2-(2S)-2-Pyrrolidinyl-1H-Benzimidazole] prices that fit your budget—flexible terms and customized quotes for every order.
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| Parameter | Specification | Method |
|---|---|---|
| Appearance | White to off‑white powder | Visual inspection |
| Molecular formula | C43H39F5N8 | Calculated |
| Molecular weight | 762.8 g mol−1 | Monoisotopic mass |
| HPLC purity (area %) | ≥ 98.0 | Reverse‑phase HPLC at 254 nm (C18, 5 µm, 150 × 4.6 mm) |
| Chiral purity (% ee) | ≥ 99.0 | Chiral HPLC (Chiralpak IA, UV 280 nm) |
| Water content (KF) | ≤ 0.5% | USP ⟨921⟩ Method Ic |
| Residual solvents | ≤ 0.05% each | Headspace GC‑MS per ICH Q3C |
| Heavy metals | ≤ 10 ppm | USP ⟨231⟩ |
Reverse‑phase purity is assessed using a C18 column (5 µm, 150 × 4.6 mm) with a mobile phase of acetonitrile/water containing 0.1% (v/v) trifluoroacetic acid, run isocratically at 40/60 v/v. Detection at 254 nm reveals a single peak with retention time typically 9.7 ± 0.2 min. System‑suitability requirements include a tailing factor ≤ 1.5 and plate count > 20 000. The limit of quantitation (LOQ) was established at 0.05% area relative to a 1.0 mg mL−1 injection, validated per ICH Q2(R1) guidelines. Chiral purity is confirmed on an immobilised amylose tris(3,5‑dimethylphenylcarbamate) column (Chiralpak IA, 250 × 4.6 mm, 5 µm), using hexane/isopropanol/diethylamine (80:20:0.1 v/v/v) at 1.0 mL min−1 and UV detection at 280 nm. The undesired (2S,5S)‑diastereomer elutes at a relative retention (α) of 1.23, with resolution Rs > 2.0 from the main peak. Enantiomeric purity is referenced against a racemate standard synthesised via a non‑stereoselective route. Results for each lot are reported in the individual Certificate of Analysis.
Storage under an inert gas at −20 ± 5 °C is mandatory to preserve chiral integrity and prevent oxidative degradation of the benzimidazole NH groups. Exposure to atmospheric moisture above 45% relative humidity at ambient temperature leads to a hygroscopic uptake reaching 2.3% (w/w) within 6 h, as determined by dynamic vapour sorption (DVS) at 25 °C. For moisture‑sensitive reactions, the compound is pre‑dried in a vacuum oven (<10 mbar, 40 °C, 12 h) over P2O5 immediately before use. Thermal robustness has been profiled by simultaneous TGA‑DSC: under nitrogen (flow 60 mL min−1, ramp 10 °C min−1) the material exhibits <0.8% mass loss up to 200 °C with an onset of thermal decomposition at 268 °C. A broad endothermic transition spanning 130–145 °C (peak 138 °C) corresponds to melting accompanied by partial desolvation. No exothermic events indicative of hazardous polymerisation are detected below 300 °C. Contact with strong nucleophiles in aprotic polar solvents at elevated temperature initiates defluorination: in DMF with Cs2CO3 at 100 °C, the 3,5‑difluorophenyl moiety undergoes regioselective substitution, generating by‑products that co‑elute with the parent compound in standard reverse‑phase HPLC. Such conditions should be avoided unless derivatisation is explicitly intended.
While 6‑fluoro‑2‑(2S)‑pyrrolidinyl‑1H‑benzimidazole (MW 205.2) provides a single nitrogen‑donor site and has been employed as a ligand in asymmetric organocatalysis, it lacks the pre‑organised convergent geometry required for tetradentate metal chelation. The title compound, with its pendant arms projecting at a dihedral angle defined by the rigid (2R,5R)‑pyrrolidine linker, creates a binding pocket that simultaneously coordinates two metal centres or a single octahedral ion. Substitution with five fluorine atoms furnishes a 19F NMR reporting handle (δ −110 to −120 ppm) and systematically alters lipophilicity (cLogP = 5.2, compared to 1.8 for the des‑fluoro core). The fluorophenyl‑piperidine segment is intentionally inserted to mimic the p‑fluorophenyl moiety found in CNS‑active agents, offering a handle for structure–activity relationship exploration. In contrast, the commercially available racemic 2,5‑bis(6‑fluoro‑1H‑benzimidazol‑2‑yl)pyrrolidine (no piperidine appendage) provides only a bis(bidentate) scaffold without the fine‑tuned steric and electronic modulation imparted by the peripheral fluorophenylpiperidine group. Moreover, the piperidine nitrogen (calculated pKa ≈ 8.9) offers a site for selective alkylation to generate quaternary ammonium derivatives without disturbing the metal‑binding cleft, a feature absent from simpler analogues.
Solubility profiling across a spectrum of laboratory solvents and biorelevant media was conducted using the saturation shake‑flask method (OECD TG 105) at 25 ± 1 °C, with quantification by UV spectrophotometry at λmax = 284 nm after filtration through a 0.22 µm PTFE membrane. Data are summarised in the following table.
| Solvent | Solubility (mg mL−1) |
|---|---|
| DMSO | > 60 |
| DMF | 55 |
| Methanol | 12 |
| Ethanol (absolute) | 5.8 |
| Acetonitrile | 3.1 |
| Water | 0.08 |
| PBS (pH 7.4) | 0.10 |
| Simulated gastric fluid (SGF, pH 1.2) | 0.65 |
| Simulated intestinal fluid (SIF, pH 6.8) | 0.12 |
Mean values of triplicate determinations; equilibration time 24 h, agitation at 300 rpm.
For in vitro pharmacological assays, stock solutions at 20 mM are prepared in anhydrous DMSO, ensuring a final DMSO concentration ≤ 0.1% (v/v) upon dilution into aqueous assay buffers. The presence of the benzimidazole NH and pyrrolidine NH moieties renders the molecule weakly basic (calculated pKa of conjugate acids ≈ 6.8 and 9.1), facilitating solubility enhancement in acidic media. However, prolonged incubation (> 48 h) in PBS at 37 °C results in a slow decline of the parent peak area by ~7%, attributed to hydrolytic opening of the benzimidazole ring, confirmed by HRMS detection of a ring‑opened amino‑amide species. Therefore, fresh dilutions are recommended for each set of biological evaluations.
The bis(benzimidazole) framework, upon deprotonation of the four benzimidazole NH protons, generates a neutral N4 donor set that binds Cu(I) with a measured log Kf of 15.7 (UV‑Vis titration in acetonitrile/H2O 9:1). The in situ generated catalyst proficiently mediates the cycloaddition of phenylacetylene and benzyl azide at 0.1 mol% loading, achieving > 95% conversion in 2 h at room temperature under an argon atmosphere. In contrast, the simple 2‑(2‑pyrrolidinyl)‑1H‑benzimidazole ligand affords only 35 % conversion under identical conditions. The accelerating effect is attributed to dual‑site binding that stabilises the Cu(I) acetylide intermediate while leaving a vacant site for azide activation—a mode not accessible with mono‑benzimidazole ligands. Anhydrous CuI and dry, degassed solvent are essential; adventitious moisture causes disproportionation to Cu(II) and metallic copper, visible as a colour change from pale yellow to green. The complexation is conveniently monitored by 19F NMR, where the signals of the fluorophenyl group shift downfield by 0.8 ppm upon metal binding.
In a typical acylation protocol, the compound (0.10 mmol) is treated with benzoic acid (1.2 eq.), HATU (1.5 eq.), and DIPEA (3.0 eq.) in anhydrous DMF at 0 °C and stirred for 3 h while warming to ambient temperature. LC‑MS analysis (ESI+) of the crude mixture after aqueous work‑up indicates > 95% conversion to the mono‑acylated product with the acylation occurring exclusively at the pendant pyrrolidine NH. Chiral HPLC analysis of the product, using the same conditions detailed in the purity section, shows no detectable epimerisation at the (2R,5R) centre; the diastereomeric excess remains ≥ 99%. This stability contrasts with the behaviour of the analogous des‑fluoro central pyrrolidine derivative, which exhibits 2‑3% racemisation under identical conditions, highlighting the beneficial influence of the electron‑withdrawing fluorinated substituents on kinetic configurational stability.
Mass spectral fingerprinting: High‑resolution electrospray ionisation mass spectrometry (HRMS‑ESI, positive mode, reserpine lock mass) yields the [M + H]+ ion at m/z 763.3292 (calculated for C43H40F5N8+ 763.3292, Δ < 2 ppm). Characteristic 19F NMR resonances (DMSO‑d6, 564 MHz) are observed at δ −112.4 ppm (3,5‑F of N‑phenyl), −116.3 ppm (4‑F of terminal phenyl), and −128.1 ppm (6‑F of benzimidazole), providing a convenient multi‑fluorine tag for reaction monitoring.
The product is distributed in flame‑sealed glass ampoules under argon in quantities of 25 mg, 100 mg, and 250 mg. Each shipment includes a lot‑specific Certificate of Analysis documenting test results against the above specification table, accompanied by 1H, 13C, and 19F NMR spectra (acquired at 600 MHz in DMSO‑d6) and a high‑resolution mass spectrum. Custom packaging with pre‑filled anhydrous solvents or larger scales is available through the CRO custom synthesis portal.