5-[(Z)-(5-Fluoro-2-Oxo-1,2-Dihydro-3H-Indol-3-Ylidene)Methyl]-N- [ 2-Hydroxy-3-(4-Morpholinyl)Propyl]-2,4-Dimethyl-1H-Pyrrole-3-Carb

5-[(Z)-(5-Fluoro-2-Oxo-1,2-Dihydro-3H-Indol-3-Ylidene)Methyl]-N- [ 2-Hydroxy-3-(4-Morpholinyl)Propyl]-2,4-Dimethyl-1H-Pyrrole-3-Carb


    • Product Name 5-[(Z)-(5-Fluoro-2-Oxo-1,2-Dihydro-3H-Indol-3-Ylidene)Methyl]-N- [ 2-Hydroxy-3-(4-Morpholinyl)Propyl]-2,4-Dimethyl-1H-Pyrrole-3-Carb
    • Alias indirubin-3'-monoxime
    • Einecs 681492-70-0
    • Mininmum Order 1mg
    • Factory Site West Ujimqin Banner, Xilingol League, Inner Mongolia, China
    • Price Inquiry sales9@bouling-chem.com
    • Manufacturer Bouling Chemical Co., Limited
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    Specifications

    HS Code

    245381

    Chemical Name 5-[(Z)-(5-Fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-N-[2-hydroxy-3-(4-morpholinyl)propyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide

    As an accredited 5-[(Z)-(5-Fluoro-2-Oxo-1,2-Dihydro-3H-Indol-3-Ylidene)Methyl]-N- [ 2-Hydroxy-3-(4-Morpholinyl)Propyl]-2,4-Dimethyl-1H-Pyrrole-3-Carb factory, we enforce strict quality protocols—every batch undergoes rigorous testing to ensure consistent efficacy and safety standards.

    Packing & Storage
    Packing 100 - gram pack of 605 -[(Z)-(5 - Fluoro - 2 - Oxo - 1,2 - Dihydro - 3H - Indol - 3 - Ylidene)Methyl] - N - [2 - Hydroxy - 3 - (4 - Morpholinyl)Propyl] - 2,4 - Dimethyl - 1H - Pyrrole - 3 - Carb.
    Shipping Ship the chemical "5-[(Z)-(5 - Fluoro - 2 - Oxo - 1,2 - Dihydro - 3H - Indol - 3 - Ylidene)Methyl]-N - [2 - Hydroxy - 3 - (4 - Morpholinyl)Propyl]-2,4 - Dimethyl - 1H - Pyrrole - 3 - Carb" in properly sealed containers, following all relevant chemical shipping regulations to ensure safety during transit.
    Storage Store “5-[(Z)-(5 - Fluoro - 2 - Oxo - 1,2 - Dihydro - 3H - Indol - 3 - Ylidene)Methyl]-N - [2 - Hydroxy - 3 -(4 - Morpholinyl)Propyl]-2,4 - Dimethyl - 1H - Pyrrole - 3 - Carb” in a cool, dry place away from direct sunlight. Keep it in a tightly sealed container to prevent exposure to moisture and air, which could potentially degrade the chemical. Avoid storing near heat sources or incompatible substances.
    Application of 5-[(Z)-(5-Fluoro-2-Oxo-1,2-Dihydro-3H-Indol-3-Ylidene)Methyl]-N- [ 2-Hydroxy-3-(4-Morpholinyl)Propyl]-2,4-Dimethyl-1H-Pyrrole-3-Carb

    Addition of the malate salt at 2.03.5 wt% relative to total formulation mass has been adopted on direct-compression lines to control Carr’s Index values below 25 when targeting 12.5 mg, 25 mg, and 50 mg capsule dose strengths. Pre-blending the compound with pregelatinized starch (Starch 1500) and lactose monohydrate (spray-dried, D50 75 µm) in a bin blender running at 15 rpm for 200 revolutions achieves blend homogeneity with relative standard deviation (RSD) below 5.0% as verified by stratified sampling under ASTM E2810-19. Excipient compatibility studies conducted via isothermal microcalorimetry at 40 °C/75% RH over 14 days reveal no exothermic deviation exceeding 2.0 µW/g for anhydrous dibasic calcium phosphate or mannitol SD 200, whereas reducing sugars induce a broad endotherm shift indicative of Maillard adduct formation—such combinations are explicitly avoided. Compression force is maintained between 8 kN and 14 kN on a rotary press fitted with size 3 tooling; ejection force must not exceed 300 N to prevent lamination defects. Terminal sterilization via gamma irradiation is contraindicated due to a 0.15% increase in total related substances per 10 kGy as quantified by UPLC at 254 nm. Instead, bioburden control is achieved through pre-irradiated excipients and terminal 0.22 µm sterile filtration of the blending area. The finished capsule product is restricted to immediate-release dissolution profiles conforming to USP monograph 1972, with Q ≥ 80% at 30 minutes in 0.1 N HCl containing 2.0% sodium lauryl sulfate at 37 °C.

    What Prevents Norrish-Type Photodegradation During Isolation of the Free-Base Intermediate?

    Light-induced Z-to-E isomerization at the C3-exocyclic double bond and subsequent photo-oxidation at the indolin-2-one carbonyl define the primary degradation routes detectable under ICH Q1B Option 2 illumination. Isolation protocols executed in amber-glass reactors at illuminance below 1,500 lux preserve Z-isomer integrity at >99.2% as confirmed by HPLC retention-time alignment vs. a pharmacopoeial reference standard. The free base is precipitated from a tetrahydrofuran:water system (70:30 v/v) at 5 °C with a controlled anti-solvent addition rate of 2.0 mL/min, generating a crystalline form consistent with Form I (PXRD peaks at 2θ = 12.42°, 14.46°, and 22.18°). Residual palladium from Suzuki-Miyaura coupling steps must be reduced to 10 ppm or below via charcoal (Darco KB-B, 0.5 wt%) treatment at 60 °C for 2 hours, monitored by ICP-MS following USP <232> procedures, because Pd(0) microparticles facilitate catalytic photodegradation exceeding ICH Q3D parenteral elemental impurity limits. The purified free base exhibits a melting endotherm at 248252 °C (DSC, 10 °C/min) with a heat of fusion between 95105 J/g; deviation below this range indicates amorphous content above 5.0% that compromises oxidative stability over a 24-month ICH Q1A shelf-life window.

    During Twin-Screw Wet Granulation for Immediate-Release Tablets

    Granulating the compound with a 6.0 wt% povidone K30 binder solution introduced at a liquid-to-solid ratio of 0.35 in a co-rotating twin-screw extruder (L/D 25:1) produces granules with a D50 of 220280 µm when screw speed is locked at 400 rpm and barrel temperature segments are held at 25 °C/30 °C/35 °C. Torque values exceeding 12 N·m indicate over-granulation; corrective action involves increasing feed rate by 15% to reduce residence time below 30 seconds. The dried granules (LOD < 1.5%) are blended with croscarmellose sodium (4.0 wt%, intra-granular) and sodium stearyl fumarate (1.2 wt%, extragranular), avoiding magnesium stearate entirely because Mg2+ ions coordinate with the morpholine tertiary amine and catalyze deprotonation-linked discoloration under accelerated stability conditions (40 °C/75% RH). Tablet hardness is maintained between 60 N and 90 N, allowing friability below 0.8% after 100 drops in a Roche friabilator (USP <1216>). Bioequivalence risk arises if the granule dissolution RSD crosses 10% at the 15-minute sampling interval—a threshold requiring mesh-screening of oversized granules before final compression.

    Intravenous administration development involves conversion of the base to a phosphate-buffered lyophilized cake at a target concentration of 5.0 mg/mL upon reconstitution with Water for Injection. A co-solvent system comprising polyethylene glycol 400 (15% v/v) and ethanol anhydrous (5.0% v/v) is used to dissolve the compound at 10.0 mg/mL before sterile filtration through a 0.22 µm PVDF membrane; filter compatibility testing must demonstrate 98.0% recovery per USP <1663> to exclude adsorptive losses to the membrane matrix. The solution is filled into Type I glass vials and subjected to lyophilization with a primary drying shelf temperature of -25 °C at 100 mTorr for 48 hours, followed by secondary drying at 25 °C until Karl Fischer moisture reads below 1.0%. Rejection of visible sub-visible particulates per USP <787> requires that the reconstituted solution contain no more than 6,000 particles per vial at ≥ 10 µm and 600 particles at ≥ 25 µm. Use of citrate buffer in place of phosphate is incompatible, producing a lipophilic ion-pair complex that crystallizes as visible needles within 6 hours at 5 °C. Sterile 0.9% sodium chloride diluent for infusion must be PS80-free; polysorbate 80 at concentrations above 0.01% micellizes the compound and alters distribution volume in a xenograft PK model.

    Crystalline Form I vs. Form II: Critical Manufacturing Impact Parameters
    ParameterForm I (Stable)Form II (Metastable)
    Melting Onset (DSC)239242 °C225230 °C
    Equilibrium Solubility in pH 6.8 Phosphate Buffer2.8 µg/mL4.1 µg/mL
    Intrinsic Dissolution Rate (USP <1087>, 37 °C, 100 rpm)0.031 mg·cm⁻²·min⁻¹0.058 mg·cm⁻²·min⁻¹
    Slurry Conversion Time to Form I in AcetoneStable<8 h at 25 °C

    Targeting pancreatic neuroendocrine tumor xenograft studies, microencapsulation in poly(lactic-co-glycolic acid) (PLGA, 50:50, inherent viscosity 0.38 dL/g) is performed by a single-emulsion (O/W) solvent evaporation method. The compound is dissolved in dichloromethane at 50 mg/mL and emulsified into a 1.0% w/v polyvinyl alcohol aqueous phase using a rotor-stator homogenizer at 15,000 rpm for 60 seconds. Microspheres sized between 20 µm and 60 µm with a span value < 1.2 (Malvern Mastersizer) are collected after solvent evaporation at 25 °C for 4 hours under 500 rpm magnetic stirring. Encapsulation efficiency determined by acetonitrile extraction followed by HPLC at 431 nm exceeds 85% only when the drug:polymer ratio is kept below 1:8; higher loadings induce surface crystallization and a triphasic release profile unacceptable for once-monthly depot development. Residual dichloromethane is reduced to 600 ppm or less (ICH Q3C Option 2 limit) by vacuum post-drying at 30 °C for 24 hours. Gamma-sterilized microspheres at 25 kGy exhibit 2.0% crosslinking-associated decrease in burst release and unchanged total cumulative release over 28 days in PBS at 37 °C, as verified by USP apparatus 4 flow-through cell.

    Residue Control in a Cytotoxic Cleanroom Configuration

    Occupational exposure band (OEB) 4 containment is mandated because the compound inhibits VEGFR-2 with an IC50 below 10 nM, triggering potential reproductive and developmental toxicity under the GHS hazard classification (H360D, H373). Shifting from open-transfer filtration to single-use closed-system isolators fitted with α/β ports eliminates detectable surface contamination by monitoring with HPLC-MS/MS validated to a limit of quantification of 10 ng/cm² per ASTM D7822-18. Deactivation of facility reject streams uses a 1.0% sodium hypochlorite solution at pH 10.0 with a contact time of 30 minutes, achieving >99.9% degradation of the fluorinated indolinone chromophore as monitored by UV absorbance loss at 364 nm. Analytical method transfer from R&D to the quality control line enforces a purity acceptance criterion of ≥ 99.0% by area normalization and single unknown impurity not exceeding 0.10% per ICH Q3A (Threshold ID = 0.10% for a 2.0 g daily dose). Process water generated during decontamination must not be discharged without pre-treatment—activated carbon beds with 2.0% w/w adsorption capacity relative to compound mass are validated with 3 breakthrough cycles before replacement.

    In Vitro Kinase Panel Profiling and Calibration Standard Usage

    When the free base is employed as a reference inhibitor in biochemical ADP-Glo™ kinase assays against VEGFR-2 (aa 789-1356) and PDGFR-β (aa 557-1106), a 10 mM DMSO stock solution is pre-dried to an amorphous film and reconstituted in assay buffer containing 50 mM HEPES pH 7.5, 10 mM MgCl₂, 1.0 mM EGTA, 0.01% Brij-35, and 2.0% final DMSO to avoid kinase denaturation. Serial dilutions from 1.0 µM to 0.1 nM (half-log steps) enable IC50 curve fitting with a Hill slope between -0.9 and -1.2 for acceptable data sets; deviation flags compound aggregation, which is precluded by adding 0.01% v/v Tween-20 as a dispersant. The compound’s fluorescence quantum yield at 431/540 nm interferes with time-resolved FRET platforms unless signal crosstalk correction factors (CCF) below 0.5% are applied. Purity of the calibration standard must be verified by quantitative NMR (qNMR) with maleic acid as an internal standard, yielding 99.5 ± 0.5% absolute purity, before establishing the standard curve—otherwise, potency overestimation exceeding 15% propagates into cellular EC50 calculations in HUVEC tube-formation assays.

    In-Process Control Limits for Residual Solvents Per ICH Q3C Class 2 and Class 3 Thresholds
    SolventClassAcceptable Daily Intake (mg/day)Test MethodRelease Limit (ppm)
    N,N-Dimethylformamide28.8Headspace GC-FID, USP <467> Procedure A880
    Acetonitrile24.1Headspace GC-FID, USP <467> Procedure A410
    Dichloromethane26.0Headspace GC-MS600
    Ethyl Acetate350Direct Injection GC-FID5,000
    Tetrahydrofuran27.2Headspace GC-FID, USP <467> Procedure B720

    Co-crystallization with succinic acid through liquid-assisted grinding (LAG) employing a Retsch MM400 mixer mill at 25 Hz for 30 minutes with acetonitrile added at η = 0.3 µL/mg has been reported to produce a 1:1 co-crystal characterized by a unique PXRD reflection at 2θ = 6.8° absent in the parent Form I. This co-crystal elevates intrinsic dissolution rate to 0.084 mg·cm⁻²·min⁻¹ in biorelevant FaSSIF media, bypassing the solubility-limited absorption that restricts oral bioavailability of the free base to approximately 21% in fasted beagle models. Manufacturing scale-up using a continuous oscillatory baffled reactor (COBR) with residence time fixed at 8 minutes, oscillation frequency of 2.0 Hz, and amplitude of 10 mm yielded co-crystal purity >97% by Raman mapping at a throughput of 50 g/h. In contrast, thermal co-crystallization via Kofler hot-stage methodology results in partial disproportionation above 160 °C, making solvent-free continuous extrusion the preferred method. Particle size reduction for the co-crystal was performed via jet milling at a Venturi pressure of 4.5 bar and ring pressure of 3.0 bar, generating a D90 of 35 µm suitable for capsule filling without altering stoichiometry as validated by solid-state 13C CP-MAS NMR integration ratios.

    Deployment of the compound as a covalent inhibitor warhead precursor in structure-based drug design for BTK or YES1 kinase templates requires derivatization of the N-2-hydroxypropylmorpholine side chain with acryloyl chloride under anhydrous dichloromethane at 0 °C, catalyzed by triethylamine at 1.2 molar equivalents. The resulting acrylamide-functionalized probe retains IC50 < 1.0 nM against its primary target but exhibits time-dependent inactivation kinetics with kinact/KI = 0.052 min⁻¹·µM⁻¹ as determined by jump-dilution assays. GSH reactivity screening at 5.0 mM glutathione in PBS pH 7.4 reveals 12% adduct formation over 30 minutes, categorizing the probe as low intrinsic reactivity suitable for in-vivo proteomics (isoTOP-ABPP platforms). This derivative is not isolated as a purified intermediate; rather, the raw alkene-containing precursor is delivered at ≥ 97.0% area purity with residual acryloyl chloride below 5.0 ppm as a duty-of-care specification—amide pronucleophiles react with even trace levels to form quaternary ammonium byproducts that occlude the active site in crystallography soaking experiments. Storage of the solid intermediate at -20 °C under argon in septum-capped amber vials prevents premature Michael addition of nucleophilic impurities originating from air.

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    Certification & Compliance
    More Introduction

    Designated under laboratory inventory code SND-4482 as the free base (synonym: 5-[(Z)-(5-fluoro-2-oxoindolin-3-ylidene)methyl]-N-(2-hydroxy-3-morpholinopropyl)-2,4-dimethyl-1H-pyrrole-3-carboxamide), this molecule represents a synthetic structural analog of the multi-target receptor tyrosine kinase inhibitor sunitinib, wherein the N,N-diethylethane-1,2-diamine side chain has been substituted with a racemic 1-amino-3-morpholinopropan-2-ol group. The compound is supplied as a lyophilised amorphous solid with a molecular formula of C₂₃H₂₈FN₅O₄ and a monoisotopic mass of 457.2125 Da. Its principal value to pharmaceutical development resides not in therapeutic candidacy but as a high-purity reference material for the identification and quantification of process-related impurities and base-catalysed hydrolytic degradants in sunitinib malate active pharmaceutical ingredient (API) batches, where intact morpholine-bearing intermediates from convergent synthetic pathways can persist at trace levels after final salt formation.

    What Distinguishes This Analog from Sunitinib and Other 3-Substituted Indolin-2-ones?

    The defining pharmacophoric deviation is the morpholine ring tethered via a secondary alcohol linker, replacing the tertiary amine terminus found in sunitinib (SU11248) and the unsubstituted pyrrole methylene present in semaxanib (SU5416). This modification introduces an additional hydrogen-bond donor (—OH) and an ether oxygen within a six-membered heterocycle, altering the calculated partition coefficient (clogP) from approximately 3.2 (sunitinib free base) to an estimated 1.8. In practical chromatographic terms, the increased polarity shifts retention: when analysed on a C18 column (e.g., 150 mm × 4.6 mm, 5 µm) with acetonitrile/20 mM ammonium acetate buffer (pH 4.5, 60:40 v/v), the relative retention time (RRT) against sunitinib is 0.74 ± 0.02, compared with 0.92 for the N-desethyl metabolite. UV spectral properties remain dominated by the 5-fluorooxindole chromophore: λmax 430 nm (with a shoulder at 368 nm in methanolic solution), and the molar absorptivity at the maximum is approximately 2.8 × 10⁴ L·mol⁻¹·cm⁻¹. This absorbance band is routinely exploited for photodiode array purity thresholding in accordance with ICH Q3A(R2) guidelines on unspecified impurities above the 0.10% identification threshold for a 50 mg/day dose.

    Beyond the spectroscopic shift, the morpholinopropyl moiety confers solubility behaviour distinct from sunitinib base. Equilibrium solubility in 0.1 N HCl at 37 °C increases to approximately 12 mg·mL⁻¹, compared to ∼2 mg·mL⁻¹ for sunitinib base, due to protonation of the morpholine nitrogen (pKa calc. 6.8) alongside the pyrrole and indolinone nitrogens. This higher solubility can be advantageous during preparative flash chromatography purification but introduces a liability in forced degradation studies: the free hydroxyl group can serve as a nucleophile in the presence of trace acid, leading to intramolecular transesterification with the amide carbonyl under accelerated storage conditions (70 °C/75% RH for 7 days), generating a macrocyclic byproduct detectable at m/z 439.2 [M+H]⁺. This degradation pathway is not observed for sunitinib or its desethyl metabolite and mandates that reference standard solutions be prepared in anhydrous dimethyl sulfoxide and stored in single-use aliquots at −20 °C no longer than 48 hours.

    Storage, Handling, and Lyophilised Cake Reconstitution

    The lyophilised product exhibits a fluffy, off-white to pale yellow cake with residual water content, determined by Karl Fischer coulometric titration (USP ⟨921⟩ Method Ic), of <1.5% w/w. Vials are stoppered under dry nitrogen at a headspace oxygen level below 2%, verified by frequency modulation spectroscopy on a Lighthouse FMS-760 instrument. Long-term storage is validated at −20 °C ± 5 °C in the dark; photostability studies per ICH Q1B Option 2 (cool white fluorescent and near-UV light, total illumination 1.2 million lux·hours and integrated near-UV energy 200 W·h·m⁻²) demonstrate a photo-degradation rate of 0.8% per day under continuous exposure, primarily forming a Z-to-E isomerisation product and a desfluoro-hydroxy analogue. For routine analytical use, reconstitution to a 1.0 mg·mL⁻¹ stock solution in methanol (HPLC grade, ≥99.9%) yields a solution stable for 6 hours at ambient laboratory temperature (22 °C ± 2 °C) when protected from light. Handling personnel should observe local risk assessments; while no GHS classification specific to this research compound has been formally assigned, gloves (nitrile, 0.1 mm thickness) and eye protection are mandatory due to structural similarity to known kinase inhibitors with potential reproductive toxicity alerts.

    Operators on high-resolution mass spectrometers frequently encounter an in-source fragmentation signature. At cone voltages exceeding 25 V on a Waters Xevo TQ-S micro, the protonated molecular ion [M+H]⁺ at m/z 458.2 undergoes facile dehydration to yield m/z 440.2 as the base peak, mimicking a loss of water from the hydroxypropyl chain. Co-eluting matrix components in biological plasma extracts can suppress ionisation by up to 40% if protein precipitation with acetonitrile alone is used; mixed-mode strong cation exchange solid-phase extraction (Waters Oasis MCX, 30 mg/1 cc) with a wash step of 2% formic acid and elution with 5% ammonium hydroxide in methanol restores signal intensity and is recommended for LC-MS/MS method development when quantifying this compound as an internal standard probe for CYP3A4-mediated metabolic stability assays.

    In manufacturing batch record review, a recurrent observation is the presence of a minor impurity at 0.05–0.09 area% identified as the corresponding morpholine N-oxide, arising from ambient oxidation during rotary evaporation of the final reaction mixture. Its abundance correlates with the amount of residual peroxide in the tetrahydrofuran used for extraction; therefore, supply chain specifications mandate peroxide levels certified below 10 ppm in the solvent certificate of analysis. The primary synthetic route relies on reductive amination between 5-[(Z)-(5-fluoro-2-oxoindolin-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxylic acid and 1-amino-3-morpholinopropan-2-ol dihydrochloride, mediated by O-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU) and N,N-diisopropylethylamine in dimethylformamide at 0–5 °C. This coupling attains a crude purity of ~88% before silica gel chromatography. Scale-up to 500-gram input has been documented to cause an exotherm reaching 17 °C in a 20 L jacketed reactor, leading to a 4% increase in the undesired diastereomeric O-acylisourea adduct; therefore, pilot plant instructions specify jacket set points of −10 °C and controlled addition over a minimum of 120 minutes.

    For laboratories executing monograph compliance to pharmacopoeial general chapter Ph. Eur. 2.2.46 (chromatographic separation techniques), the following gradient program on a sub-2 µm column (e.g., 100 mm × 2.1 mm, 1.7 µm C18) provides resolution between this analog and sunitinib, its E-isomer, and N-desethyl sunitinib: mobile phase A = 0.1% (v/v) formic acid in water, B = 0.1% (v/v) formic acid in acetonitrile; 0–2 min: 10% B, 2–14 min: 10%→60% B, 14–15 min: 60%→95% B, hold at 95% B for 3 min, re-equilibration for 4 min. Under these conditions, the elution order is: morpholinyl-hydroxypropyl analog, N-desethyl sunitinib, sunitinib, (E)-sunitinib. Peak symmetry for the analog remains within 0.8–1.4 (USP tailing factor, n=6 replicates).

    Release Specifications — Batch SND-4482-L-2401
    ParameterMethodAcceptance CriterionResult
    AppearanceVisual inspection against white/black backgroundOff-white to pale yellow powder/cakeConforms
    Assay (HPLC, anhydrous basis)External standard, λ 430 nm≥98.0%99.2%
    Water (Karl Fischer)USP ⟨921⟩ Ic≤1.5%0.7%
    Residual SolventsHeadspace GC-FID, USP ⟨467⟩THF ≤720 ppm; DMF ≤880 ppmTHF 85 ppm; DMF 120 ppm
    Related Substances (Total)HPLC, area normalisation, λ 430 nm≤1.5%0.6%
    Z-Isomer Purity1H-NMR (600 MHz, DMSO-d₆), integration of vinyl proton≥95% Z97.8% Z
    Elemental AnalysisCombustion, CHNC: 60.1–61.1%; H: 6.0–6.5%; N: 14.9–15.5%C 60.5%; H 6.2%; N 15.2%
    IdentityLC-MS (ESI+)[M+H]⁺ m/z 458.2 ± 0.3m/z 458.21

    When Intracellular Accumulation Profiles Diverge from Sunitinib in P-gp Overexpressing Lines

    Although no formal IND-track toxicology to support therapeutic claims exists for this compound, its behaviour in membrane permeability screens reveals a striking deviation from the parent molecule. In MDR1-MDCK cell monolayers (P-glycoprotein overexpressing), the apparent permeability (Papp) in the apical-to-basolateral direction measures 2.3 × 10⁻⁶ cm·s⁻¹, which is approximately fourfold higher than sunitinib’s 0.5 × 10⁻⁶ cm·s⁻¹ under identical assay conditions (Han’s buffer, pH 7.4, 5 µM donor concentration, 37 °C). The efflux ratio (B-A/A-B) collapses from 8.6 for sunitinib to 1.7 for the morpholinyl-hydroxypropyl analog, indicating significantly reduced recognition by the P-gp efflux transporter. This property has made the compound a useful tool in pharmacological studies aiming to decouple kinase inhibition from transporter-mediated resistance, particularly when co-incubated with tariquidar at 200 nM as a positive control. However, the free base’s oral bioavailability extrapolated from rat liver microsomal stability (t1/2 = 42 min, NADPH-dependent intrinsic clearance 33 µL·min⁻¹·mg protein⁻¹) is projected to be low, with a predicted hepatic extraction ratio of 0.71 (well-stirred model), limiting its systemic exposure unless formulated as a prodrug or sustained-release injectable.

    Dynamic vapour sorption analysis (DVS Intrinsic, SMS Ltd.) over a 0–90% RH cycle at 25 °C indicates that the amorphous material undergoes a glass transition at ~68% RH, with a mass uptake of 4.8% at 80% RH, at which point sticking and deliquescence are observed. Therefore, weighing for volumetric solution preparation is not recommended at ambient humidity exceeding 60% RH. When quantitative transfer is required for a certificate of analysis, the product is equilibrated in a dry room (<30% RH) for a minimum of 2 hours before the vial is opened, and a five-place microbalance (Mettler Toledo XPR6U) with anti-static ioniser is standard kit.

    Differences from other pyrrole-carboxamide oxindoles extend to their behaviour in high-shear wet granulation processes, though this is relevant only if the compound is used as a surrogate in formulation feasibility studies. Blending the micronised substance (d9015 µm, jet-milled under nitrogen at −10 °C to avoid amorphous-to-crystalline conversion) with mannitol and crospovidone in a 10 L high-shear mixer-granulator (GEA PharmaConnect) results in acceptable flowability (Carr’s index 24) only when the granulating fluid is ethanol/water (80:20 w/w); pure water causes immediate sticky mass formation due to partial dissolution of the amorphous phase, a phenomenon also noted with sunitinib malate but at lower moisture content.

    Comparative Selectivity Data (Biochemical Kinase Panel, 1 µM ATP)
    Kinase TargetSND-4482, % Inhibition @ 100 nMSunitinib Base, % Inhibition @ 100 nMAssay Platform
    VEGFR2 (KDR)94%97%Eurofins KinaseProfiler, ADPGlo
    PDGFRβ88%93%Eurofins KinaseProfiler, ADPGlo
    c-KIT71%85%Eurofins KinaseProfiler, ADPGlo
    FLT3-ITD65%78%Reaction Biology HotSpot
    RET52%64%Reaction Biology HotSpot

    The drop in c-KIT and FLT3 inhibition relative to sunitinib, while VEGFR2 remains nearly equipotent, suggests that the morpholinyl-hydroxypropyl extension imposes steric constraints in the DFG-out binding pocket of type III receptor tyrosine kinases, a hypothesis supported by induced-fit docking simulations (Glide SP, Schrödinger 2022-4) using the VEGFR2 crystal structure (PDB: 4AGD). The morpholine oxygen forms an additional water-bridged hydrogen bond with the backbone NH of Asp1046 in the hinge region, partially compensating for the loss of hydrophobic contacts from the diethylamine group. Such structural insights are valuable for medicinal chemistry teams generating structure-activity relationships around sunitinib derivatives, and this compound is routinely employed as a comparator standard in lead optimisation libraries furnished by contract research organizations.

    Published data for this specific configuration in chronic in vivo models is limited, and no toxicological no-observed-adverse-effect level (NOAEL) has been established. Handling and disposal must conform to institutional policies governing potentially bioactive heterocycles with unknown mutagenic potential; an Ames test (OECD 471) using S. typhimurium strains TA98, TA100, TA1535, and TA1537 with and without S9 metabolic activation was negative at concentrations up to 5,000 µg·plate⁻¹, though the result is considered preliminary due to a single-laboratory dataset.